PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019421
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 314aa    MW: 34262.6 Da    PI: 10.3807
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019421genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.4e-31241298359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  DCAR_019421 241 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGEHNHS 298
                  99************************988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-13191237IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-32228299IPR003657WRKY domain
PROSITE profilePS5081130.194234300IPR003657WRKY domain
SuperFamilySSF1182901.27E-26237299IPR003657WRKY domain
SMARTSM007741.9E-38239299IPR003657WRKY domain
PfamPF031061.1E-26241297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAVELMTNNA YKFGAKLEHN SVQEAALAGL ESVDNLIRMI SRSQHYSNIS QSSSSSNSHE  60
NNVTDYRAVT DIAVNKFRTF ISLLDKTRTG HARFRRGPGV RTLETQVIKP KNEIVAPVQR  120
QALNNQAVKN VSFEKKEHVT STINFGSVAA VVPSGTNSFM SSLTGDTDGS GFQITNMSSG  180
SRPPASTSSF KRKCSSMDNS AARCSGSSGR CHCPKKSRKS KLKKVVRVPA ISLKMSDIPP  240
DDFSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA LDDPAMLVVT YEGEHNHSQS  300
LHDTPASLVL ESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-202373061578Probable WRKY transcription factor 4
2lex_A1e-202373061578Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275001.11e-126WRKY transcription factor 2
TrEMBLK4EQ481e-146K4EQ48_PANQU; WRKY1
TrEMBLX2BZB81e-146X2BZB8_PANQU; Transcription factor WRKY1
STRINGSolyc04g078550.2.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.15e-71WRKY DNA-binding protein 15